Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 1563679..1564322 Replicon chromosome
Accession NZ_CP121076
Organism Salmonella enterica subsp. enterica serovar Infantis strain R22.3740

Toxin (Protein)


Gene name vagD Uniprot ID B1LRW4
Locus tag P8I06_RS07510 Protein ID WP_001044768.1
Coordinates 1563679..1564095 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID D2WFK3
Locus tag P8I06_RS07515 Protein ID WP_001261287.1
Coordinates 1564092..1564322 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P8I06_RS07495 (1560178) 1560178..1560768 - 591 WP_000194575.1 hypothetical protein -
P8I06_RS07500 (1560768) 1560768..1561025 - 258 WP_000343085.1 hypothetical protein -
P8I06_RS07505 (1561379) 1561379..1563517 + 2139 WP_075322282.1 AAA family ATPase -
P8I06_RS07510 (1563679) 1563679..1564095 - 417 WP_001044768.1 type II toxin-antitoxin system VapC family toxin Toxin
P8I06_RS07515 (1564092) 1564092..1564322 - 231 WP_001261287.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
P8I06_RS07520 (1564630) 1564630..1566195 + 1566 WP_000741348.1 AAA family ATPase -
P8I06_RS07525 (1566252) 1566252..1567121 - 870 WP_000253407.1 hypothetical protein -
P8I06_RS07530 (1567123) 1567123..1568211 - 1089 WP_000952231.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element blaCTX-M-65 - 1541233..1642804 101571


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-52)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15197.66 Da        Isoelectric Point: 7.7805

>T275636 WP_001044768.1 NZ_CP121076:c1564095-1563679 [Salmonella enterica subsp. enterica serovar Infantis]
VNKTYMLDTCICSFIMREQPEAVLKRLEQAVLRGHRIVVSAITYSEMRFGATGPKASPRHVQLVDEFCARLDAILPWDRA
AVDATTKIKVALRLAGTPIGPNDTAIAGHAIAAGAILVTNNTREFERVPDLVLEDWVK

Download         Length: 417 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8815.90 Da        Isoelectric Point: 4.3775

>AT275636 WP_001261287.1 NZ_CP121076:c1564322-1564092 [Salmonella enterica subsp. enterica serovar Infantis]
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWGSFLEYEKADPDFMAEREDVVSDEGRFNL

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A606Q844

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QFC4

References