Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040458..2040603 | Replicon | chromosome |
| Accession | NZ_CP120847 | ||
| Organism | Klebsiella pneumoniae strain KPHRJ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040494..2040596 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040458..2040603 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5D18_RS09870 | 2035588..2037648 | + | 2061 | WP_252005265.1 | oligopeptidase B | - |
| P5D18_RS09875 | 2037652..2038311 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| P5D18_RS09880 | 2038390..2038620 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P5D18_RS09885 | 2038733..2039107 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P5D18_RS09890 | 2039111..2039980 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| P5D18_RS09895 | 2039997..2040335 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2040458..2040603 | - | 146 | - | - | Antitoxin |
| - | 2040494..2040596 | + | 103 | - | - | Toxin |
| P5D18_RS09900 | 2040972..2041115 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| P5D18_RS09905 | 2041220..2042188 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P5D18_RS09910 | 2042345..2042998 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| P5D18_RS09915 | 2042995..2043186 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P5D18_RS09920 | 2043284..2043523 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P5D18_RS09925 | 2043639..2045072 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275418 NZ_CP120847:2040494-2040596 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275418 NZ_CP120847:c2040603-2040458 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
