Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 3645934..3646420 Replicon chromosome
Accession NZ_CP120638
Organism Rhizobium sp. 32-5/1

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag P6U16_RS18330 Protein ID WP_277701693.1
Coordinates 3646151..3646420 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag P6U16_RS18325 Protein ID WP_277701692.1
Coordinates 3645934..3646167 (+) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P6U16_RS18305 (P6U16_18305) 3640980..3641366 + 387 WP_277701690.1 cytochrome c family protein -
P6U16_RS18310 (P6U16_18310) 3641499..3642587 + 1089 WP_277701691.1 hypothetical protein -
P6U16_RS18315 (P6U16_18315) 3642788..3643935 + 1148 Protein_3604 hypothetical protein -
P6U16_RS18320 (P6U16_18320) 3643940..3645848 + 1909 Protein_3605 AAA family ATPase -
P6U16_RS18325 (P6U16_18325) 3645934..3646167 + 234 WP_277701692.1 DUF6290 family protein Antitoxin
P6U16_RS18330 (P6U16_18330) 3646151..3646420 + 270 WP_277701693.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P6U16_RS18335 (P6U16_18335) 3646442..3647740 + 1299 WP_277701694.1 hypothetical protein -
P6U16_RS18340 (P6U16_18340) 3647733..3648857 + 1125 WP_277701695.1 DUF2333 family protein -
P6U16_RS18345 (P6U16_18345) 3649054..3650733 + 1680 WP_277701696.1 formate--tetrahydrofolate ligase -
P6U16_RS18350 (P6U16_18350) 3650789..3651298 - 510 WP_277701697.1 DUF1993 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-88)

Antitoxin

Protein of unknown function DUF6290

(6-73)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10506.17 Da        Isoelectric Point: 10.4008

>T275318 WP_277701693.1 NZ_CP120638:3646151-3646420 [Rhizobium sp. 32-5/1]
MVWTIDITNNAEKALRKMGSSDVRRLRDFLFGRVALLDDPRQIGQALQGNELGHLWRYRVGDFRVLCEIRDNRLVILVVE
IGHRREVYR

Download         Length: 270 bp

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8908.07 Da        Isoelectric Point: 4.2815

>AT275318 WP_277701692.1 NZ_CP120638:3645934-3646167 [Rhizobium sp. 32-5/1]
MTRQTAIRLPDETYERLQVLATRTGRTATYYIREAIEQHLEDLEDIYLAEQVLEKLARGEITTRPLAEVMAELGLDD

Download         Length: 234 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References