Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 1016856..1017484 Replicon chromosome
Accession NZ_CP120638
Organism Rhizobium sp. 32-5/1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag P6U16_RS05320 Protein ID WP_277702888.1
Coordinates 1016856..1017257 (-) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag P6U16_RS05325 Protein ID WP_277702889.1
Coordinates 1017254..1017484 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P6U16_RS05310 (P6U16_05310) 1013031..1014656 - 1626 WP_277702886.1 diguanylate cyclase -
P6U16_RS05315 (P6U16_05315) 1014886..1016730 + 1845 WP_277702887.1 caspase family protein -
P6U16_RS05320 (P6U16_05320) 1016856..1017257 - 402 WP_277702888.1 PIN domain-containing protein Toxin
P6U16_RS05325 (P6U16_05325) 1017254..1017484 - 231 WP_277702889.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
P6U16_RS05330 (P6U16_05330) 1017550..1021009 - 3460 Protein_1044 chromosome segregation protein SMC -
P6U16_RS05335 (P6U16_05335) 1021093..1021977 - 885 WP_277704017.1 DsbA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-115)

Antitoxin

SpoVT-AbrB domain

(5-46)


Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 14770.11 Da        Isoelectric Point: 6.8382

>T275317 WP_277702888.1 NZ_CP120638:c1017257-1016856 [Rhizobium sp. 32-5/1]
VKAFFDTNVLVYLVSDDPKKIPAAACLRQGGIVSVQVLNEFVHVVRRKLRHDWNTIELALKHFHIALDDIVPLTAQFHAA
ALPLARDHGLTIYDALIVAAAIEAGCDTLFSEDMQHGRAFGRVTIRNPFLETV

Download         Length: 402 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8446.73 Da        Isoelectric Point: 5.1088

>AT275317 WP_277702889.1 NZ_CP120638:c1017484-1017254 [Rhizobium sp. 32-5/1]
MQVSKWGNSLAVRLPKKLVEQMGLVEGDEIDLVNGAGKTLIIKKDDRREAALAALASLNLPLPPDYKFDREEANER

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References