Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 787512..788031 Replicon chromosome
Accession NZ_CP120638
Organism Rhizobium sp. 32-5/1

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag P6U16_RS04095 Protein ID WP_277702706.1
Coordinates 787750..788031 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag P6U16_RS04090 Protein ID WP_277702705.1
Coordinates 787512..787760 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P6U16_RS04085 (P6U16_04085) 785389..787387 + 1999 Protein_798 PhoX family phosphatase -
P6U16_RS04090 (P6U16_04090) 787512..787760 + 249 WP_277702705.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
P6U16_RS04095 (P6U16_04095) 787750..788031 + 282 WP_277702706.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P6U16_RS04100 (P6U16_04100) 788034..788543 - 510 WP_277702707.1 PaaI family thioesterase -
P6U16_RS04105 (P6U16_04105) 788557..789315 - 759 WP_277702708.1 DNA repair protein RecO -
P6U16_RS04110 (P6U16_04110) 789397..791733 - 2337 WP_277702709.1 Tex family protein -
P6U16_RS04115 (P6U16_04115) 791851..792849 - 999 WP_277702710.1 glutathione S-transferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10803.58 Da        Isoelectric Point: 10.8764

>T275316 WP_277702706.1 NZ_CP120638:787750-788031 [Rhizobium sp. 32-5/1]
MRYKLAFLAAALKEWEKLDSNTRALFKKRLTERLETPRAPSAQLHGSKDRYKIKLRSAGYRLVYEVRDQDIVVVVIAVGR
RDHSDIYGKAAKR

Download         Length: 282 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8766.03 Da        Isoelectric Point: 4.0700

>AT275316 WP_277702705.1 NZ_CP120638:787512-787760 [Rhizobium sp. 32-5/1]
MASTILAETSASISELKRNPMGTVAAGDGFPVAILNHNEPAFYCVPAPAFEALMNRLEDLELNRIADSRIGEPVIPVEID
AL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References