Detailed information of TA system TA275291

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1006863..1007131
• Replicon: chromosome
• Accession: NZ_CP120633
• Organism: Escherichia coli strain USVAST219

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1006901..1007003 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1006863..1007131 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
P6O79_RS05310	1004021..1005460	+	1440	WP_001296139.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
P6O79_RS05315	1005577..1005813	+	237	WP_001295499.1	YebV family protein	-
P6O79_RS05320	1005918..1006109	+	192	WP_001296140.1	YebW family protein	-
P6O79_RS05325	1006110..1006766	-	657	WP_000812745.1	protein-serine/threonine phosphatase	-
-	1006863..1007131	+	269	-	-	Antitoxin
-	1006901..1007003	-	103	-	-	Toxin
P6O79_RS05330	1007161..1007502	-	342	WP_000976472.1	YebY family protein	-
P6O79_RS05335	1007515..1008387	-	873	WP_000879317.1	copper homeostasis membrane protein CopD	-
P6O79_RS05340	1008391..1008765	-	375	WP_000168747.1	CopC domain-containing protein YobA	-
P6O79_RS05345	1008904..1009134	+	231	WP_000916763.1	DNA polymerase III subunit theta	-
P6O79_RS05350	1009236..1009892	+	657	WP_000011664.1	carbon-nitrogen hydrolase family protein YobB	-
P6O79_RS05355	1009916..1010578	+	663	WP_000944256.1	exodeoxyribonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 103 bp

>T275291 NZ_CP120633:c1007003-1006901 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin

Nucleotide

• Length: 269 bp

>AT275291 NZ_CP120633:1006863-1007131 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Antitoxin