Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
| Location | 44169..44722 | Replicon | plasmid pH22_122286 |
| Accession | NZ_CP120564 | ||
| Organism | Escherichia coli strain H22 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1PMX5 |
| Locus tag | P5708_RS24780 | Protein ID | WP_000421257.1 |
| Coordinates | 44169..44444 (-) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | P5708_RS24785 | Protein ID | WP_019842653.1 |
| Coordinates | 44444..44722 (-) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5708_RS24755 (40035) | 40035..41519 | - | 1485 | WP_097419528.1 | alpha/beta hydrolase | - |
| P5708_RS24760 (41704) | 41704..42654 | - | 951 | WP_107131109.1 | omptin family outer membrane protease | - |
| P5708_RS24765 (42979) | 42979..43104 | + | 126 | Protein_42 | efflux transporter periplasmic adaptor subunit | - |
| P5708_RS24770 (43108) | 43108..43344 | - | 237 | WP_137498364.1 | colicin V immunity protein | - |
| P5708_RS24775 (43860) | 43860..44063 | - | 204 | Protein_44 | hypothetical protein | - |
| P5708_RS24780 (44169) | 44169..44444 | - | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| P5708_RS24785 (44444) | 44444..44722 | - | 279 | WP_019842653.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
| P5708_RS24790 (44809) | 44809..45595 | - | 787 | Protein_47 | IS21 family transposase | - |
| P5708_RS24795 (45717) | 45717..46064 | - | 348 | WP_019842650.1 | DUF6404 family protein | - |
| P5708_RS24800 (46183) | 46183..46530 | + | 348 | WP_001595228.1 | colicin E1 family microcin immunity protein | - |
| P5708_RS24805 (46548) | 46548..48428 | - | 1881 | WP_277708340.1 | colicin Ia central receptor-binding domain-containing protein | - |
| P5708_RS24810 (48669) | 48669..48872 | + | 204 | Protein_51 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | iroB / iroC / iroD / iroE / iroN / papD / papC | 1..122286 | 122286 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|