Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1206926..1207197 | Replicon | chromosome |
| Accession | NZ_CP120557 | ||
| Organism | Escherichia coli strain B771 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1206964..1207067 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1206926..1207197 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5709_RS06175 | 1204083..1205522 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P5709_RS06180 | 1205640..1205876 | + | 237 | WP_001295499.1 | YebV family protein | - |
| P5709_RS06185 | 1205981..1206172 | + | 192 | WP_001296140.1 | YebW family protein | - |
| P5709_RS06190 | 1206173..1206829 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1206926..1207197 | + | 272 | - | - | Antitoxin |
| - | 1206964..1207067 | - | 104 | - | - | Toxin |
| P5709_RS06195 | 1207224..1207565 | - | 342 | WP_000976472.1 | YebY family protein | - |
| P5709_RS06200 | 1207578..1208450 | - | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| P5709_RS06205 | 1208454..1208828 | - | 375 | WP_277715405.1 | CopC domain-containing protein YobA | - |
| P5709_RS06210 | 1208967..1209197 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P5709_RS06215 | 1209299..1209955 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P5709_RS06220 | 1209979..1210641 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275126 NZ_CP120557:c1207067-1206964 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275126 NZ_CP120557:1206926-1207197 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
