Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017185..2017453 | Replicon | chromosome |
| Accession | NC_017651 | ||
| Organism | Escherichia coli str. clone D i2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017223..2017325 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017185..2017453 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I02_RS10270 | 2014342..2015781 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I02_RS10275 | 2015899..2016135 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I02_RS10280 | 2016240..2016431 | + | 192 | WP_001317886.1 | YebW family protein | - |
| I02_RS10285 | 2016432..2017088 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2017185..2017453 | + | 269 | - | - | Antitoxin |
| - | 2017223..2017325 | - | 103 | - | - | Toxin |
| I02_RS10295 | 2017483..2017824 | - | 342 | WP_000984819.1 | YebY family protein | - |
| I02_RS10300 | 2017837..2018709 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| I02_RS10305 | 2018713..2019087 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I02_RS10310 | 2019226..2019456 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I02_RS10315 | 2019559..2020215 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| I02_RS10320 | 2020239..2020901 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T27512 NC_017651:c2017325-2017223 [Escherichia coli str. 'clone D i2']
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT27512 NC_017651:2017185-2017453 [Escherichia coli str. 'clone D i2']
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
