Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2253558..2253826 | Replicon | chromosome |
| Accession | NZ_CP120549 | ||
| Organism | Escherichia coli strain B1172 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2253686..2253788 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2253558..2253826 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5710_RS10575 | 2250112..2250774 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P5710_RS10580 | 2250797..2251453 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P5710_RS10585 | 2251555..2251785 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P5710_RS10590 | 2251924..2252298 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| P5710_RS10595 | 2252302..2253174 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| P5710_RS10600 | 2253187..2253528 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2253558..2253826 | - | 269 | - | - | Antitoxin |
| - | 2253686..2253788 | + | 103 | - | - | Toxin |
| P5710_RS10605 | 2253923..2254579 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| P5710_RS10610 | 2254580..2254771 | - | 192 | WP_001317886.1 | YebW family protein | - |
| P5710_RS10615 | 2254876..2255112 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P5710_RS10620 | 2255230..2256669 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275102 NZ_CP120549:2253686-2253788 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT275102 NZ_CP120549:c2253826-2253558 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
