Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2854221..2854366 | Replicon | chromosome |
| Accession | NZ_CP120524 | ||
| Organism | Enterobacter roggenkampii strain 0-E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2854228..2854331 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2854221..2854366 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3S52_RS15030 (P3S52_15050) | 2850481..2851929 | + | 1449 | WP_195319554.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P3S52_RS15035 (P3S52_15055) | 2852036..2852275 | + | 240 | WP_008500472.1 | YebV family protein | - |
| P3S52_RS15040 (P3S52_15060) | 2852310..2852954 | - | 645 | WP_032652374.1 | protein-serine/threonine phosphatase | - |
| P3S52_RS15045 (P3S52_15065) | 2853121..2854062 | + | 942 | WP_032652376.1 | VirK/YbjX family protein | - |
| - | 2854221..2854366 | + | 146 | - | - | Antitoxin |
| - | 2854228..2854331 | - | 104 | - | - | Toxin |
| P3S52_RS15050 (P3S52_15070) | 2854470..2854808 | - | 339 | WP_032652385.1 | YebY family protein | - |
| P3S52_RS15055 (P3S52_15075) | 2854825..2855694 | - | 870 | WP_032652388.1 | copper homeostasis membrane protein CopD | - |
| P3S52_RS15060 (P3S52_15080) | 2855696..2856067 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| P3S52_RS15065 (P3S52_15085) | 2856205..2856435 | + | 231 | WP_200448326.1 | DNA polymerase III subunit theta | - |
| P3S52_RS15070 (P3S52_15090) | 2856546..2857196 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| P3S52_RS15075 (P3S52_15095) | 2857221..2857883 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275090 NZ_CP120524:c2854331-2854228 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275090 NZ_CP120524:2854221-2854366 [Enterobacter roggenkampii]
CAGATAAAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
