Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773775..2773918 | Replicon | chromosome |
| Accession | NZ_CP120398 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 424-2019_CI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773777..2773879 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773775..2773918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA85_RS13885 (PVA85_13885) | 2771053..2772183 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA85_RS13890 (PVA85_13890) | 2772469..2772864 | - | 396 | Protein_2722 | DUF977 family protein | - |
| PVA85_RS13895 (PVA85_13895) | 2772877..2772987 | - | 111 | Protein_2723 | replication protein | - |
| PVA85_RS13900 (PVA85_13900) | 2772988..2773349 | + | 362 | Protein_2724 | recombinase RecT | - |
| PVA85_RS13905 (PVA85_13905) | 2773348..2773656 | + | 309 | Protein_2725 | tyrosine-type recombinase/integrase | - |
| - | 2773775..2773918 | + | 144 | - | - | Antitoxin |
| - | 2773777..2773879 | - | 103 | - | - | Toxin |
| PVA85_RS13910 (PVA85_13910) | 2774020..2774373 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA85_RS13915 (PVA85_13915) | 2774390..2775265 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA85_RS13920 (PVA85_13920) | 2775266..2775640 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA85_RS13925 (PVA85_13925) | 2775778..2776008 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA85_RS13930 (PVA85_13930) | 2776116..2776772 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA85_RS13935 (PVA85_13935) | 2776796..2777494 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2750236..2795791 | 45555 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275040 NZ_CP120398:c2773879-2773777 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT275040 NZ_CP120398:2773775-2773918 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
