Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2733975..2734118 | Replicon | chromosome |
| Accession | NZ_CP120397 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2733977..2734079 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2733975..2734118 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA76_RS13605 (PVA76_13605) | 2731253..2732383 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA76_RS13610 (PVA76_13610) | 2732669..2733064 | - | 396 | Protein_2664 | DUF977 family protein | - |
| PVA76_RS13615 (PVA76_13615) | 2733077..2733187 | - | 111 | Protein_2665 | replication protein | - |
| PVA76_RS13620 (PVA76_13620) | 2733188..2733549 | + | 362 | Protein_2666 | recombinase RecT | - |
| PVA76_RS13625 (PVA76_13625) | 2733548..2733856 | + | 309 | Protein_2667 | tyrosine-type recombinase/integrase | - |
| - | 2733975..2734118 | + | 144 | - | - | Antitoxin |
| - | 2733977..2734079 | - | 103 | - | - | Toxin |
| PVA76_RS13630 (PVA76_13630) | 2734220..2734573 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA76_RS13635 (PVA76_13635) | 2734590..2735465 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA76_RS13640 (PVA76_13640) | 2735466..2735840 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA76_RS13645 (PVA76_13645) | 2735978..2736208 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA76_RS13650 (PVA76_13650) | 2736316..2736972 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA76_RS13655 (PVA76_13655) | 2736996..2737694 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2710437..2755991 | 45554 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275026 NZ_CP120397:c2734079-2733977 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT275026 NZ_CP120397:2733975-2734118 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
