Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773879..2774022 | Replicon | chromosome |
| Accession | NZ_CP120395 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 1698-2017_CI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773881..2773983 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773879..2774022 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA70_RS13945 (PVA70_13945) | 2771157..2772287 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA70_RS13950 (PVA70_13950) | 2772573..2772968 | - | 396 | Protein_2734 | DUF977 family protein | - |
| PVA70_RS13955 (PVA70_13955) | 2772981..2773091 | - | 111 | Protein_2735 | replication protein | - |
| PVA70_RS13960 (PVA70_13960) | 2773092..2773453 | + | 362 | Protein_2736 | recombinase RecT | - |
| PVA70_RS13965 (PVA70_13965) | 2773452..2773760 | + | 309 | Protein_2737 | tyrosine-type recombinase/integrase | - |
| - | 2773879..2774022 | + | 144 | - | - | Antitoxin |
| - | 2773881..2773983 | - | 103 | - | - | Toxin |
| PVA70_RS13970 (PVA70_13970) | 2774124..2774477 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA70_RS13975 (PVA70_13975) | 2774494..2775369 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA70_RS13980 (PVA70_13980) | 2775370..2775744 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA70_RS13985 (PVA70_13985) | 2775882..2776112 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA70_RS13990 (PVA70_13990) | 2776220..2776876 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA70_RS13995 (PVA70_13995) | 2776900..2777598 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2750340..2795895 | 45555 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T274993 NZ_CP120395:c2773983-2773881 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT274993 NZ_CP120395:2773879-2774022 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
