Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2756779..2756922 | Replicon | chromosome |
| Accession | NZ_CP120394 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 2027-2019_CI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2756781..2756883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2756779..2756922 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA73_RS13835 (PVA73_13835) | 2754057..2755187 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA73_RS13840 (PVA73_13840) | 2755473..2755868 | - | 396 | Protein_2710 | DUF977 family protein | - |
| PVA73_RS13845 (PVA73_13845) | 2755881..2755991 | - | 111 | Protein_2711 | replication protein | - |
| PVA73_RS13850 (PVA73_13850) | 2755992..2756353 | + | 362 | Protein_2712 | recombinase RecT | - |
| PVA73_RS13855 (PVA73_13855) | 2756352..2756660 | + | 309 | Protein_2713 | tyrosine-type recombinase/integrase | - |
| - | 2756779..2756922 | + | 144 | - | - | Antitoxin |
| - | 2756781..2756883 | - | 103 | - | - | Toxin |
| PVA73_RS13860 (PVA73_13860) | 2757024..2757377 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA73_RS13865 (PVA73_13865) | 2757394..2758269 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA73_RS13870 (PVA73_13870) | 2758270..2758644 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA73_RS13875 (PVA73_13875) | 2758782..2759012 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA73_RS13880 (PVA73_13880) | 2759120..2759776 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA73_RS13885 (PVA73_13885) | 2759800..2760498 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2724881..2762586 | 37705 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T274978 NZ_CP120394:c2756883-2756781 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT274978 NZ_CP120394:2756779-2756922 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
