Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773796..2773939 | Replicon | chromosome |
| Accession | NZ_CP120393 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 1698-2017_CO_06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773798..2773900 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773796..2773939 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA83_RS13875 (PVA83_13875) | 2771074..2772204 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA83_RS13880 (PVA83_13880) | 2772490..2772885 | - | 396 | Protein_2720 | DUF977 family protein | - |
| PVA83_RS13885 (PVA83_13885) | 2772898..2773008 | - | 111 | Protein_2721 | replication protein | - |
| PVA83_RS13890 (PVA83_13890) | 2773009..2773370 | + | 362 | Protein_2722 | recombinase RecT | - |
| PVA83_RS13895 (PVA83_13895) | 2773369..2773677 | + | 309 | Protein_2723 | tyrosine-type recombinase/integrase | - |
| - | 2773796..2773939 | + | 144 | - | - | Antitoxin |
| - | 2773798..2773900 | - | 103 | - | - | Toxin |
| PVA83_RS13900 (PVA83_13900) | 2774041..2774394 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA83_RS13905 (PVA83_13905) | 2774411..2775286 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA83_RS13910 (PVA83_13910) | 2775287..2775661 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA83_RS13915 (PVA83_13915) | 2775799..2776029 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA83_RS13920 (PVA83_13920) | 2776137..2776793 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA83_RS13925 (PVA83_13925) | 2776817..2777515 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2750257..2795812 | 45555 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T274963 NZ_CP120393:c2773900-2773798 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT274963 NZ_CP120393:2773796-2773939 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
