274941

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/-
Location 5864540..5865136 Replicon chromosome
Accession NZ_CP120376
Organism Pseudomonas nitroreducens strain L4

Toxin (Protein)


Gene name PfiT Uniprot ID -
Locus tag P3T65_RS26895 Protein ID WP_277368790.1
Coordinates 5864540..5864881 (-) Length 114 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID -
Locus tag P3T65_RS26900 Protein ID WP_277368791.1
Coordinates 5864888..5865136 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3T65_RS26860 (P3T65_26860) 5860417..5861181 - 765 WP_065085981.1 RES family NAD+ phosphorylase -
P3T65_RS26865 (P3T65_26865) 5861182..5861550 - 369 WP_024763405.1 DUF2384 domain-containing protein -
P3T65_RS26870 (P3T65_26870) 5861820..5862311 + 492 WP_065085982.1 RcnB family protein -
P3T65_RS26875 (P3T65_26875) 5862318..5862749 - 432 WP_024763403.1 hypothetical protein -
P3T65_RS26880 (P3T65_26880) 5862874..5863356 + 483 WP_065085983.1 GreA/GreB family elongation factor -
P3T65_RS26885 (P3T65_26885) 5863490..5863837 + 348 WP_017522075.1 carboxymuconolactone decarboxylase family protein -
P3T65_RS26890 (P3T65_26890) 5863937..5864305 + 369 WP_024763401.1 hypothetical protein -
P3T65_RS26895 (P3T65_26895) 5864540..5864881 - 342 WP_277368790.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P3T65_RS26900 (P3T65_26900) 5864888..5865136 - 249 WP_277368791.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
P3T65_RS26905 (P3T65_26905) 5865237..5866511 - 1275 WP_277368792.1 hypothetical protein -
P3T65_RS26910 (P3T65_26910) 5866753..5868042 - 1290 WP_277368793.1 zonular occludens toxin domain-containing protein -
P3T65_RS26915 (P3T65_26915) 5868046..5868402 - 357 WP_054909843.1 DUF2523 family protein -
P3T65_RS26920 (P3T65_26920) 5868406..5869689 - 1284 WP_277368794.1 attachment protein -
P3T65_RS26925 (P3T65_26925) 5869840..5870079 - 240 WP_024763395.1 major capsid protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-100)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 13045.79 Da        Isoelectric Point: 4.6115

>T274941 WP_277368790.1 NZ_CP120376:c5864881-5864540 [Pseudomonas nitroreducens]
MTVREIRFTETAVFSIQDQEEHLAEYHPPELAAVKIDGLIDEILTRLQNAPVGYPVSRQATDLGVTRYRELNHDGYRVFY
EVYEHDNVIAVELVLRQKQDVEAALIRYCLVGI

Download         Length: 342 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9308.71 Da        Isoelectric Point: 9.5977

>AT274941 WP_277368791.1 NZ_CP120376:c5865136-5864888 [Pseudomonas nitroreducens]
VRVETISYLKRHAADLDLDEPMVVTQNGVPTLVVESYAERKRRDQAIALVKLLAMGSREYAEGKHCSVDELKARLAKRRS
QQ

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References