Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
Location | 2638154..2638620 | Replicon | chromosome |
Accession | NZ_CP120376 | ||
Organism | Pseudomonas nitroreducens strain L4 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | P3T65_RS12245 | Protein ID | WP_277369418.1 |
Coordinates | 2638435..2638620 (-) | Length | 62 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A1B8TB76 |
Locus tag | P3T65_RS12240 | Protein ID | WP_037011255.1 |
Coordinates | 2638154..2638450 (-) | Length | 99 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
P3T65_RS12215 (P3T65_12215) | 2633488..2634126 | - | 639 | WP_038803252.1 | membrane protein | - |
P3T65_RS12220 (P3T65_12220) | 2634263..2635573 | - | 1311 | WP_277369314.1 | HAMP domain-containing sensor histidine kinase | - |
P3T65_RS12225 (P3T65_12225) | 2635570..2636310 | - | 741 | WP_024767564.1 | response regulator | - |
P3T65_RS12230 (P3T65_12230) | 2636536..2636808 | + | 273 | WP_024767565.1 | DUF2790 domain-containing protein | - |
P3T65_RS12235 (P3T65_12235) | 2636902..2638122 | + | 1221 | WP_277369315.1 | cytochrome c biogenesis protein DipZ | - |
P3T65_RS12240 (P3T65_12240) | 2638154..2638450 | - | 297 | WP_037011255.1 | putative addiction module antidote protein | Antitoxin |
P3T65_RS12245 (P3T65_12245) | 2638435..2638620 | - | 186 | WP_277369418.1 | hypothetical protein | Toxin |
P3T65_RS12250 (P3T65_12250) | 2638859..2640706 | - | 1848 | WP_084358319.1 | diguanylate cyclase | - |
P3T65_RS12260 (P3T65_12260) | 2641048..2641941 | - | 894 | WP_065085020.1 | alpha/beta hydrolase | - |
P3T65_RS12265 (P3T65_12265) | 2642444..2643277 | + | 834 | WP_024767718.1 | transporter substrate-binding domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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