274917

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 329633..330132 Replicon plasmid pSkuCCBAU71714a
Accession NZ_CP120366
Organism Sinorhizobium kummerowiae strain CCBAU 71714

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PZL22_RS25940 Protein ID WP_127700860.1
Coordinates 329633..329806 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PZL22_RS25945 Protein ID WP_017268224.1
Coordinates 329803..330132 (-) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PZL22_RS25915 (PZL22_005187) 325498..326814 + 1317 WP_127700862.1 aspartate aminotransferase family protein -
PZL22_RS25920 (PZL22_005188) 327193..327678 - 486 WP_010967936.1 YidB family protein -
PZL22_RS25925 (PZL22_005189) 327706..327957 - 252 WP_003534243.1 GlsB/YeaQ/YmgE family stress response membrane protein -
PZL22_RS25930 (PZL22_005190) 328552..328911 + 360 WP_013845635.1 VOC family protein -
PZL22_RS25935 (PZL22_005191) 329230..329535 + 306 WP_013845638.1 hypothetical protein -
PZL22_RS25940 (PZL22_005192) 329633..329806 - 174 WP_127700860.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PZL22_RS25945 (PZL22_005193) 329803..330132 - 330 WP_017268224.1 hypothetical protein Antitoxin
PZL22_RS25950 (PZL22_005194) 330067..330252 + 186 WP_013845639.1 hypothetical protein -
PZL22_RS25955 (PZL22_005195) 330493..331863 + 1371 WP_013845640.1 alpha/beta hydrolase -
PZL22_RS25960 (PZL22_005196) 332247..332588 + 342 Protein_319 hypothetical protein -
PZL22_RS25965 (PZL22_005197) 332572..332910 - 339 WP_164843022.1 SDR family oxidoreductase -
PZL22_RS25970 (PZL22_005198) 333027..333470 - 444 WP_127700858.1 PACE efflux transporter -
PZL22_RS25975 (PZL22_005199) 333562..334455 + 894 WP_010967943.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid - htpB / htpB 1..1418903 1418903


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6523.40 Da        Isoelectric Point: 5.7733

>T274917 WP_127700860.1 NZ_CP120366:c329806-329633 [Sinorhizobium kummerowiae]
MKLVWARYALDDRDAIFSYIERENPRAAVHVDEEVVSAGRPLDFPEIRRPGRIAGTP

Download         Length: 174 bp

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 12053.69 Da        Isoelectric Point: 11.1401

>AT274917 WP_017268224.1 NZ_CP120366:c330132-329803 [Sinorhizobium kummerowiae]
VSERLLLIALLALGPFRASQRHTGRPALLRRGPQSAAGAVEEHFIQLRAPLWLITLGGFSHREAHDAWFRAKVLRALEDT
RPDADDADADAHFQERRAAALRKAAAGDR

Download         Length: 330 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References