Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 6350..6866 Replicon chromosome
Accession NZ_CP120359
Organism Pseudomonas sp. AA-38

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PVE35_RS00030 Protein ID WP_268180144.1
Coordinates 6579..6866 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PVE35_RS00025 Protein ID WP_179574984.1
Coordinates 6350..6589 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PVE35_RS00010 1517..2620 + 1104 WP_268180138.1 DNA polymerase III subunit beta -
PVE35_RS00015 2628..3731 + 1104 WP_268180140.1 DNA replication/repair protein RecF -
PVE35_RS00020 3736..6156 + 2421 WP_268180142.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
PVE35_RS00025 6350..6589 + 240 WP_179574984.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
PVE35_RS00030 6579..6866 + 288 WP_268180144.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PVE35_RS00035 6905..9286 + 2382 WP_277373385.1 DEAD/DEAH box helicase family protein -
PVE35_RS00040 9984..10916 - 933 WP_277373386.1 phosphatidate cytidylyltransferase -
PVE35_RS00045 10918..11541 - 624 WP_268180150.1 lysophospholipid acyltransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11247.04 Da        Isoelectric Point: 9.9156

>T274890 WP_268180144.1 NZ_CP120359:6579-6866 [Pseudomonas sp. AA-38]
MTYSLEFDARALKEWHKLGDTVREQFKKKLAEVLVNPRVEANRLHSLPDCYKIKLRSSGYRLVYQVIDHEVVVFVVAVDR
RDREQAYLKAAERLK

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9196.55 Da        Isoelectric Point: 4.5348

>AT274890 WP_179574984.1 NZ_CP120359:6350-6589 [Pseudomonas sp. AA-38]
MASINIRIDDELKERAYRELEKLGVTPSELMRQTLQYVAERGQLPFRPVLLTEEDEALIATVRERLETPQRVKVSLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References