Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2141996..2142264 | Replicon | chromosome |
| Accession | NC_017646 | ||
| Organism | Escherichia coli O7:K1 str. CE10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2142034..2142136 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2141996..2142264 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CE10_RS11025 | 2139153..2140592 | + | 1440 | WP_012602287.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CE10_RS11030 | 2140710..2140946 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CE10_RS11035 | 2141051..2141242 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CE10_RS11040 | 2141243..2141899 | - | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| - | 2141996..2142264 | + | 269 | - | - | Antitoxin |
| - | 2142034..2142136 | - | 103 | - | - | Toxin |
| CE10_RS11050 | 2142293..2142634 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CE10_RS11055 | 2142647..2143519 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| CE10_RS11060 | 2143523..2143897 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| CE10_RS11065 | 2144036..2144266 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CE10_RS11070 | 2144368..2145024 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CE10_RS11075 | 2145048..2145710 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T27485 NC_017646:c2142136-2142034 [Escherichia coli O7:K1 str. CE10]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT27485 NC_017646:2141996-2142264 [Escherichia coli O7:K1 str. CE10]
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
