Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1983414..1983557 | Replicon | chromosome |
| Accession | NZ_CP120341 | ||
| Organism | Salmonella enterica subsp. enterica serovar Muenchen strain PS_PB_1_2021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1983453..1983555 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1983414..1983557 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1831_RS09495 | 1979838..1980536 | - | 699 | WP_053445490.1 | exodeoxyribonuclease X | - |
| P1831_RS09500 | 1980560..1981216 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| P1831_RS09505 | 1981324..1981554 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1831_RS09510 | 1981692..1982066 | + | 375 | WP_053445489.1 | CopC domain-containing protein YobA | - |
| P1831_RS09515 | 1982067..1982942 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| P1831_RS09520 | 1982959..1983312 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1983414..1983557 | - | 144 | - | - | Antitoxin |
| - | 1983453..1983555 | + | 103 | - | - | Toxin |
| P1831_RS09525 | 1983695..1984516 | - | 822 | Protein_1860 | tyrosine-type recombinase/integrase | - |
| P1831_RS09530 | 1984617..1985372 | - | 756 | WP_001282653.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
| P1831_RS09535 | 1985389..1986924 | - | 1536 | WP_023181050.1 | IS21 family transposase | - |
| P1831_RS09540 | 1987036..1987419 | - | 384 | WP_283903209.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P1831_RS09545 | 1987400..1987672 | - | 273 | WP_038390080.1 | excisionase | - |
| P1831_RS09550 | 1987745..1988161 | - | 417 | WP_022630509.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1977752..2053057 | 75305 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T274806 NZ_CP120341:1983453-1983555 [Salmonella enterica subsp. enterica serovar Muenchen]
GCCAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCCAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT274806 NZ_CP120341:c1983557-1983414 [Salmonella enterica subsp. enterica serovar Muenchen]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTGGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTGGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
