Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2101760..2101905 | Replicon | chromosome |
| Accession | NZ_CP120339 | ||
| Organism | Salmonella enterica subsp. enterica serovar Muenchen strain PS_Mu_5_2021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2101800..2101903 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2101760..2101905 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1826_RS10355 | 2098186..2098884 | - | 699 | WP_021294108.1 | exodeoxyribonuclease X | - |
| P1826_RS10360 | 2098908..2099564 | - | 657 | WP_021294109.1 | carbon-nitrogen hydrolase family protein | - |
| P1826_RS10365 | 2099672..2099902 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1826_RS10370 | 2100040..2100414 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| P1826_RS10375 | 2100415..2101290 | + | 876 | WP_021294110.1 | copper homeostasis membrane protein CopD | - |
| P1826_RS10380 | 2101307..2101660 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2101760..2101905 | - | 146 | - | - | Antitoxin |
| - | 2101800..2101903 | + | 104 | - | - | Toxin |
| P1826_RS10385 | 2102033..2103112 | - | 1080 | WP_020438172.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P1826_RS10390 | 2103145..2104295 | - | 1151 | Protein_2032 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| P1826_RS10395 | 2104284..2104475 | + | 192 | Protein_2033 | glycoside hydrolase family 19 protein | - |
| P1826_RS10400 | 2104529..2105062 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| P1826_RS10405 | 2105319..2105486 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| P1826_RS10410 | 2105551..2105739 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| P1826_RS10415 | 2105794..2106054 | + | 261 | Protein_2037 | DUF1441 family protein | - |
| P1826_RS10420 | 2106269..2106631 | + | 363 | Protein_2038 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2096098..2141617 | 45519 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274788 NZ_CP120339:2101800-2101903 [Salmonella enterica subsp. enterica serovar Muenchen]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT274788 NZ_CP120339:c2101905-2101760 [Salmonella enterica subsp. enterica serovar Muenchen]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
