Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1983424..1983567 | Replicon | chromosome |
| Accession | NZ_CP120329 | ||
| Organism | Salmonella enterica subsp. enterica serovar Muenchen strain PS_PB_1_2021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1983463..1983565 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1983424..1983567 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1707_RS09495 | 1979848..1980546 | - | 699 | WP_053445490.1 | exodeoxyribonuclease X | - |
| P1707_RS09500 | 1980570..1981226 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| P1707_RS09505 | 1981334..1981564 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1707_RS09510 | 1981702..1982076 | + | 375 | WP_053445489.1 | CopC domain-containing protein YobA | - |
| P1707_RS09515 | 1982077..1982952 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| P1707_RS09520 | 1982969..1983322 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1983424..1983567 | - | 144 | - | - | Antitoxin |
| - | 1983463..1983565 | + | 103 | - | - | Toxin |
| P1707_RS09525 | 1983705..1984562 | - | 858 | WP_283903208.1 | tyrosine-type recombinase/integrase | - |
| P1707_RS09530 | 1984627..1985382 | - | 756 | WP_001282653.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
| P1707_RS09535 | 1985399..1986934 | - | 1536 | WP_023181050.1 | IS21 family transposase | - |
| P1707_RS09540 | 1987046..1987429 | - | 384 | WP_283903209.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P1707_RS09545 | 1987410..1987682 | - | 273 | WP_038390080.1 | excisionase | - |
| P1707_RS09550 | 1987755..1988171 | - | 417 | WP_022630509.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1977762..2053069 | 75307 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T274704 NZ_CP120329:1983463-1983565 [Salmonella enterica subsp. enterica serovar Muenchen]
GCCAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCCAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT274704 NZ_CP120329:c1983567-1983424 [Salmonella enterica subsp. enterica serovar Muenchen]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTGGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTGGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
