Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3220694..3220839 | Replicon | chromosome |
| Accession | NZ_CP120327 | ||
| Organism | Salmonella enterica subsp. enterica serovar Muenchen strain PS_Mu_10_2021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3220696..3220799 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3220694..3220839 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1825_RS15570 | 3215968..3216330 | - | 363 | Protein_3031 | macro domain-containing protein | - |
| P1825_RS15575 | 3216545..3216805 | - | 261 | Protein_3032 | DUF1441 family protein | - |
| P1825_RS15580 | 3216860..3217048 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| P1825_RS15585 | 3217113..3217280 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| P1825_RS15590 | 3217537..3218070 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| P1825_RS15595 | 3218124..3218315 | - | 192 | Protein_3036 | glycoside hydrolase family 19 protein | - |
| P1825_RS15600 | 3218304..3219454 | + | 1151 | Protein_3037 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| P1825_RS15605 | 3219487..3220566 | + | 1080 | WP_020438172.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3220694..3220839 | + | 146 | - | - | Antitoxin |
| - | 3220696..3220799 | - | 104 | - | - | Toxin |
| P1825_RS15610 | 3220939..3221292 | - | 354 | WP_000722368.1 | YebY family protein | - |
| P1825_RS15615 | 3221309..3222184 | - | 876 | WP_021294110.1 | copper homeostasis membrane protein CopD | - |
| P1825_RS15620 | 3222185..3222559 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| P1825_RS15625 | 3222697..3222927 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1825_RS15630 | 3223035..3223691 | + | 657 | WP_021294109.1 | carbon-nitrogen hydrolase family protein | - |
| P1825_RS15635 | 3223715..3224413 | + | 699 | WP_021294108.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 3193909..3226501 | 32592 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274690 NZ_CP120327:c3220799-3220696 [Salmonella enterica subsp. enterica serovar Muenchen]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT274690 NZ_CP120327:3220694-3220839 [Salmonella enterica subsp. enterica serovar Muenchen]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
