Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2101752..2101897 | Replicon | chromosome |
| Accession | NZ_CP120325 | ||
| Organism | Salmonella enterica subsp. enterica serovar Muenchen strain PS_Mu_11_2021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2101792..2101895 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2101752..2101897 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1704_RS10355 | 2098178..2098876 | - | 699 | WP_021294108.1 | exodeoxyribonuclease X | - |
| P1704_RS10360 | 2098900..2099556 | - | 657 | WP_021294109.1 | carbon-nitrogen hydrolase family protein | - |
| P1704_RS10365 | 2099664..2099894 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1704_RS10370 | 2100032..2100406 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| P1704_RS10375 | 2100407..2101282 | + | 876 | WP_021294110.1 | copper homeostasis membrane protein CopD | - |
| P1704_RS10380 | 2101299..2101652 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2101752..2101897 | - | 146 | - | - | Antitoxin |
| - | 2101792..2101895 | + | 104 | - | - | Toxin |
| P1704_RS10385 | 2102025..2103104 | - | 1080 | WP_020438172.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P1704_RS10390 | 2103137..2104287 | - | 1151 | Protein_2032 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| P1704_RS10395 | 2104276..2104467 | + | 192 | Protein_2033 | glycoside hydrolase family 19 protein | - |
| P1704_RS10400 | 2104521..2105054 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| P1704_RS10405 | 2105311..2105478 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| P1704_RS10410 | 2105787..2106047 | + | 261 | Protein_2036 | DUF1441 family protein | - |
| P1704_RS10415 | 2106262..2106624 | + | 363 | Protein_2037 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2096090..2141610 | 45520 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274667 NZ_CP120325:2101792-2101895 [Salmonella enterica subsp. enterica serovar Muenchen]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT274667 NZ_CP120325:c2101897-2101752 [Salmonella enterica subsp. enterica serovar Muenchen]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
