Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2025131..2025276 | Replicon | chromosome |
| Accession | NZ_CP120322 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain PS_Ent_1_2022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2025171..2025274 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2025131..2025276 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1705_RS09720 | 2021557..2022255 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| P1705_RS09725 | 2022279..2022935 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| P1705_RS09730 | 2023043..2023273 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P1705_RS09735 | 2023411..2023785 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| P1705_RS09740 | 2023786..2024661 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| P1705_RS09745 | 2024678..2025031 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2025131..2025276 | - | 146 | - | - | Antitoxin |
| - | 2025171..2025274 | + | 104 | - | - | Toxin |
| P1705_RS09750 | 2025414..2026493 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P1705_RS09755 | 2026468..2026746 | - | 279 | WP_001575998.1 | excisionase | - |
| P1705_RS09760 | 2027160..2029139 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| P1705_RS09765 | 2029458..2029556 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| P1705_RS09770 | 2029858..2030076 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 2005132..2066250 | 61118 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274651 NZ_CP120322:2025171-2025274 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT274651 NZ_CP120322:c2025276-2025131 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
