Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 1195169..1195718 Replicon chromosome
Accession NZ_CP120211
Organism Agrobacterium leguminum strain CFBP4996

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CFBP4996_RS05930 Protein ID WP_080852022.1
Coordinates 1195169..1195459 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag CFBP4996_RS05935 Protein ID WP_080852020.1
Coordinates 1195452..1195718 (-) Length 89 a.a.

Genomic Context

CFBP4996_RS05920CFBP4996_RS05925CFBP4996_RS05945CFBP4996_RS05950CFBP4996_RS05915CFBP4996_RS05930CFBP4996_RS05935CFBP4996_RS05940
Location: 1193181..1193810 (630 bp)
Type: Others
Protein ID: WP_003525062.1
Location: 1193943..1195091 (1149 bp)
Type: Others
Protein ID: WP_080852024.1
Location: 1196652..1199573 (2922 bp)
Type: Others
Protein ID: WP_003525047.1
Location: 1199630..1200430 (801 bp)
Type: Others
Protein ID: WP_080852018.1
Location: 1190171..1192963 (2793 bp)
Type: Others
Protein ID: WP_080852025.1
Location: 1195169..1195459 (291 bp)
Type: Toxin
Protein ID: WP_080852022.1
Location: 1195452..1195718 (267 bp)
Type: Antitoxin
Protein ID: WP_080852020.1
Location: 1195812..1196387 (576 bp)
Type: Others
Protein ID: WP_065655441.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFBP4996_RS05915 (CFBP4996_05915)1190171..1192963-2793WP_080852025.1DNA gyrase subunit A-
CFBP4996_RS05920 (CFBP4996_05920)1193181..1193810+630WP_003525062.1MarC family protein-
CFBP4996_RS05925 (CFBP4996_05925)1193943..1195091+1149WP_080852024.1HPP family protein-
CFBP4996_RS05930 (CFBP4996_05930)1195169..1195459-291WP_080852022.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFBP4996_RS05935 (CFBP4996_05935)1195452..1195718-267WP_080852020.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
CFBP4996_RS05940 (CFBP4996_05940)1195812..1196387-576WP_065655441.1single-stranded DNA-binding protein-
CFBP4996_RS05945 (CFBP4996_05945)1196652..1199573+2922WP_003525047.1excinuclease ABC subunit UvrA-
CFBP4996_RS05950 (CFBP4996_05950)1199630..1200430+801WP_080852018.1DUF72 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10948.68 Da        Isoelectric Point: 9.5467

>T274592 WP_080852022.1 NZ_CP120211:c1195459-1195169 [Agrobacterium leguminum]
VNSYRLTKQAESEILDIFIYGVEQFGLRQAHFYKNEMKSCFQLLGDNPRMGRLAPAIGEGVRRHEHGSHIILYEIDGAGV
LILTVVHGRSIRRLKL

Download         Length: 291 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9922.13 Da        Isoelectric Point: 4.6583

>AT274592 WP_080852020.1 NZ_CP120211:c1195718-1195452 [Agrobacterium leguminum]
MATMTVSLPDPMKEWIETQVLTGEYASVSDYVRDLVRRDRARRGQEFSVDELRQIVADSRASGIGSRSMDDLFTEAERIA
AARGVVRE

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References