Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 474843..475387 Replicon chromosome
Accession NZ_CP120211
Organism Agrobacterium leguminum strain CFBP4996

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CFBP4996_RS02305 Protein ID WP_162935992.1
Coordinates 475097..475387 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag CFBP4996_RS02300 Protein ID WP_080852551.1
Coordinates 474843..475094 (+) Length 84 a.a.

Genomic Context

CFBP4996_RS02280CFBP4996_RS02285CFBP4996_RS02295CFBP4996_RS02300CFBP4996_RS02305CFBP4996_RS02320CFBP4996_RS02325CFBP4996_RS02330CFBP4996_RS02275CFBP4996_RS02290CFBP4996_RS02310CFBP4996_RS02315
Location: 470835..471515 (681 bp)
Type: Others
Protein ID: WP_059754101.1
Location: 471562..472023 (462 bp)
Type: Others
Protein ID: WP_080853232.1
Location: 473322..474467 (1146 bp)
Type: Others
Protein ID: WP_003520492.1
Location: 474843..475094 (252 bp)
Type: Antitoxin
Protein ID: WP_080852551.1
Location: 475097..475387 (291 bp)
Type: Toxin
Protein ID: WP_162935992.1
Location: 477355..477819 (465 bp)
Type: Others
Protein ID: WP_035263001.1
Location: 477847..478368 (522 bp)
Type: Others
Protein ID: WP_065116149.1
Location: 478498..479178 (681 bp)
Type: Others
Protein ID: WP_072494057.1
Location: 469923..470612 (690 bp)
Type: Others
Protein ID: WP_003520496.1
Location: 471983..473083 (1101 bp)
Type: Others
Protein ID: WP_080852552.1
Location: 475425..476036 (612 bp)
Type: Others
Protein ID: WP_080852549.1
Location: 476119..477228 (1110 bp)
Type: Others
Protein ID: WP_080852548.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFBP4996_RS02275 (CFBP4996_02275)469923..470612-690WP_003520496.1HAD family hydrolase-
CFBP4996_RS02280 (CFBP4996_02280)470835..471515+681WP_059754101.1GntR family transcriptional regulator-
CFBP4996_RS02285 (CFBP4996_02285)471562..472023+462WP_080853232.1DUF1284 domain-containing protein-
CFBP4996_RS02290 (CFBP4996_02290)471983..473083-1101WP_080852552.1hypothetical protein-
CFBP4996_RS02295 (CFBP4996_02295)473322..474467+1146WP_003520492.1site-specific DNA-methyltransferase-
CFBP4996_RS02300 (CFBP4996_02300)474843..475094+252WP_080852551.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
CFBP4996_RS02305 (CFBP4996_02305)475097..475387+291WP_162935992.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFBP4996_RS02310 (CFBP4996_02310)475425..476036-612WP_080852549.1HAD family phosphatase-
CFBP4996_RS02315 (CFBP4996_02315)476119..477228-1110WP_080852548.1A/G-specific adenine glycosylase-
CFBP4996_RS02320 (CFBP4996_02320)477355..477819+465WP_035263001.1hypothetical protein-
CFBP4996_RS02325 (CFBP4996_02325)477847..478368+522WP_065116149.1DUF721 domain-containing protein-
CFBP4996_RS02330 (CFBP4996_02330)478498..479178+681WP_072494057.1DsbA family protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(12-62)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11369.13 Da        Isoelectric Point: 6.4908

>T274589 WP_162935992.1 NZ_CP120211:475097-475387 [Agrobacterium leguminum]
MGFRLSLLAEEDVIRIVEEGIVLFGLAQAQKYHRELYEIFELISRNPRMARERHELLPPLRIHRFRAHLVVYAVGTDDDV
LIVRVRHAHEDWANEL

Download         Length: 291 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9413.67 Da        Isoelectric Point: 9.5892

>AT274589 WP_080852551.1 NZ_CP120211:474843-475094 [Agrobacterium leguminum]
MATMNISLPAPMKEWVEAQSRTGRYSNASDYVRDLIRKDQERGEKIAAMQRFVDEGLQSGVGYRSQEALFAEAEARSMKR
KIG

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References