Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2228819..2229090 | Replicon | chromosome |
| Accession | NC_017641 | ||
| Organism | Escherichia coli UMNK88 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2228857..2228960 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2228819..2229090 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS11425 | 2225976..2227415 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| UMNK88_RS11430 | 2227533..2227769 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| UMNK88_RS11435 | 2227874..2228065 | + | 192 | WP_001296140.1 | YebW family protein | - |
| UMNK88_RS11440 | 2228066..2228722 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2228819..2229090 | + | 272 | - | - | Antitoxin |
| - | 2228857..2228960 | - | 104 | - | - | Toxin |
| UMNK88_RS11450 | 2229117..2229458 | - | 342 | WP_000976472.1 | YebY family protein | - |
| UMNK88_RS11455 | 2229471..2230343 | - | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| UMNK88_RS11460 | 2230347..2230721 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| UMNK88_RS11465 | 2230860..2231090 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| UMNK88_RS11470 | 2231192..2231848 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| UMNK88_RS11475 | 2231872..2232534 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27449 NC_017641:c2228960-2228857 [Escherichia coli UMNK88]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27449 NC_017641:2228819-2229090 [Escherichia coli UMNK88]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
