Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2482066..2482531 Replicon chromosome
Accession NZ_CP119967
Organism Pseudomonas sp. A34-9

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag P3G59_RS11155 Protein ID WP_083368636.1
Coordinates 2482066..2482335 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag P3G59_RS11160 Protein ID WP_083368637.1
Coordinates 2482325..2482531 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3G59_RS11120 2477377..2477850 + 474 WP_277761557.1 type II secretion system protein -
P3G59_RS11125 2477856..2478230 + 375 WP_007919395.1 type II secretion system protein -
P3G59_RS11130 2478205..2478744 + 540 WP_277761558.1 type II secretion system protein -
P3G59_RS11135 2478741..2479133 + 393 WP_277761559.1 curli production assembly/transport protein CsgE -
P3G59_RS11140 2479130..2479561 + 432 WP_034152593.1 curli assembly protein CsgF -
P3G59_RS11145 2479590..2480450 + 861 WP_277761560.1 CsgG/HfaB family protein -
P3G59_RS11150 2481495..2481866 + 372 WP_277761561.1 DUF6124 family protein -
P3G59_RS11155 2482066..2482335 - 270 WP_083368636.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
P3G59_RS11160 2482325..2482531 - 207 WP_083368637.1 antitoxin Antitoxin
P3G59_RS11165 2482832..2484283 - 1452 WP_277761562.1 curlin -
P3G59_RS11170 2484311..2484775 - 465 WP_103305806.1 curlin -
P3G59_RS11175 2484847..2487081 - 2235 WP_277761563.1 Ig-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10187.77 Da        Isoelectric Point: 7.3988

>T274488 WP_083368636.1 NZ_CP119967:c2482335-2482066 [Pseudomonas sp. A34-9]
MQVEWQPEARAELLKILDYISDRNLVAADRLSQAIEGATVTLAQHPHLYRIGRAPGTREMVVHPNYLIIYQVVGRINILS
VLHARQEYP

Download         Length: 270 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7609.72 Da        Isoelectric Point: 4.2985

>AT274488 WP_083368637.1 NZ_CP119967:c2482531-2482325 [Pseudomonas sp. A34-9]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWLIAKVQASMSDTRPSIPNDQVMAEMRALMEAKRKKYDAG

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References