Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 212136..212652 Replicon chromosome
Accession NZ_CP119967
Organism Pseudomonas sp. A34-9

Toxin (Protein)


Gene name relE Uniprot ID A0A2S9B813
Locus tag P3G59_RS00905 Protein ID WP_064389059.1
Coordinates 212371..212652 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag P3G59_RS00900 Protein ID WP_095122322.1
Coordinates 212136..212381 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3G59_RS00865 207339..207944 + 606 WP_277760084.1 adenylyl-sulfate kinase -
P3G59_RS00870 207941..208726 + 786 WP_277760085.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
P3G59_RS00875 208714..209658 + 945 WP_277760086.1 sulfotransferase family protein -
P3G59_RS00880 209739..210497 - 759 WP_007917711.1 slipin family protein -
P3G59_RS00885 210500..211030 - 531 WP_277760087.1 NfeD family protein -
P3G59_RS00890 211205..211666 + 462 WP_095047033.1 YbaK/EbsC family protein -
P3G59_RS00895 211796..212041 + 246 WP_277760088.1 DUF2789 domain-containing protein -
P3G59_RS00900 212136..212381 + 246 WP_095122322.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
P3G59_RS00905 212371..212652 + 282 WP_064389059.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P3G59_RS00910 212796..213224 + 429 WP_277760089.1 winged helix DNA-binding protein -
P3G59_RS00915 213221..215284 + 2064 WP_277760090.1 FUSC family protein -
P3G59_RS00920 215281..215490 + 210 WP_007917703.1 DUF1656 domain-containing protein -
P3G59_RS00925 215487..216389 + 903 WP_277760091.1 HlyD family secretion protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-68)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10817.72 Da        Isoelectric Point: 10.6086

>T274486 WP_064389059.1 NZ_CP119967:212371-212652 [Pseudomonas sp. A34-9]
MTYKLEFLPSAHKEWNKLGHTLREQFKKKLGERLKLPRVSADALHGMPDCYKIKLKASGYRLVYQVIDERVVVSVVAVGK
RERSSVYENAKKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8723.00 Da        Isoelectric Point: 4.4988

>AT274486 WP_095122322.1 NZ_CP119967:212136-212381 [Pseudomonas sp. A34-9]
MQSVLADMAVSVSELKKNPSAVLSGAHGGAVAVLNHNRVMGYMVPADVYEAMMERLDDLELAEIVRARSHETPISVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2S9B813

Antitoxin

Source ID Structure

References