Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2881035..2881246 | Replicon | chromosome |
| Accession | NZ_CP119862 | ||
| Organism | Citrobacter sp. S171 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2881041..2881144 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2881035..2881246 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P2W74_RS13965 | 2877248..2878159 | - | 912 | WP_276292071.1 | LysR substrate-binding domain-containing protein | - |
| P2W74_RS13970 | 2878344..2879549 | + | 1206 | WP_276292072.1 | MFS transporter | - |
| P2W74_RS13975 | 2879546..2880718 | + | 1173 | WP_276292073.1 | amidohydrolase | - |
| - | 2881035..2881246 | + | 212 | - | - | Antitoxin |
| - | 2881041..2881144 | - | 104 | - | - | Toxin |
| P2W74_RS13980 | 2881300..2881638 | - | 339 | WP_276292074.1 | YebY family protein | - |
| P2W74_RS13985 | 2881655..2882527 | - | 873 | WP_276292075.1 | copper homeostasis membrane protein CopD | - |
| P2W74_RS13990 | 2882530..2882904 | - | 375 | WP_276292076.1 | CopC domain-containing protein YobA | - |
| P2W74_RS13995 | 2883043..2883273 | + | 231 | WP_162383786.1 | DNA polymerase III subunit theta | - |
| P2W74_RS14000 | 2883380..2884036 | + | 657 | WP_276292077.1 | carbon-nitrogen hydrolase family protein | - |
| P2W74_RS14005 | 2884059..2884721 | + | 663 | WP_276292078.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274466 NZ_CP119862:c2881144-2881041 [Citrobacter sp. S171]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 212 bp
>AT274466 NZ_CP119862:2881035-2881246 [Citrobacter sp. S171]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGTGGCTAAAGTGG
CCGGAAAAAAAGGATGCTTGTCACCCGCTACAACGTAAAAACCGCAAGTTCT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGTGGCTAAAGTGG
CCGGAAAAAAAGGATGCTTGTCACCCGCTACAACGTAAAAACCGCAAGTTCT
