Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4039583..4039665 Replicon chromosome
Accession NZ_CP119773
Organism Dickeya fangzhongdai strain ZXC1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4039585..4039665 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4039583..4039665 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQ617_RS17990 (PQ617_17990) 4035843..4037216 - 1374 WP_276217825.1 pectate lyase -
PQ617_RS17995 (PQ617_17995) 4037912..4039081 + 1170 WP_276217826.1 hypothetical protein -
- 4039583..4039665 + 83 - - Antitoxin
- 4039585..4039665 - 81 - - Toxin
PQ617_RS18000 (PQ617_18000) 4039835..4040173 - 339 WP_038918972.1 YebY family protein -
PQ617_RS18005 (PQ617_18005) 4040716..4041132 + 417 WP_276219683.1 hypothetical protein -
PQ617_RS18010 (PQ617_18010) 4041475..4041723 + 249 WP_038918974.1 GlsB/YeaQ/YmgE family stress response membrane protein -
PQ617_RS18015 (PQ617_18015) 4041837..4043579 - 1743 WP_276217827.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T274456 NZ_CP119773:c4039665-4039585 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT274456 NZ_CP119773:4039583-4039665 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References