Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 5500209..5500714 Replicon chromosome
Accession NZ_CP119772
Organism Pseudomonas sp. D3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag P3S72_RS25425 Protein ID WP_276194792.1
Coordinates 5500460..5500714 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag P3S72_RS25420 Protein ID WP_276194791.1
Coordinates 5500209..5500463 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3S72_RS25405 (P3S72_25400) 5495515..5496516 + 1002 WP_276194788.1 diguanylate cyclase -
P3S72_RS25410 (P3S72_25405) 5496708..5497958 + 1251 WP_276194789.1 aspartate aminotransferase family protein -
P3S72_RS25415 (P3S72_25410) 5497955..5499979 - 2025 WP_276194790.1 c-type cytochrome -
P3S72_RS25420 (P3S72_25415) 5500209..5500463 + 255 WP_276194791.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
P3S72_RS25425 (P3S72_25420) 5500460..5500714 + 255 WP_276194792.1 Txe/YoeB family addiction module toxin Toxin
P3S72_RS25430 (P3S72_25425) 5500792..5501295 + 504 WP_276194793.1 hypothetical protein -
P3S72_RS25435 (P3S72_25430) 5501366..5502082 + 717 WP_276194794.1 hypothetical protein -
P3S72_RS25440 (P3S72_25435) 5502151..5503245 - 1095 WP_276194795.1 pyridoxal phosphate-dependent aminotransferase -
P3S72_RS25445 (P3S72_25440) 5503394..5504281 - 888 WP_276194796.1 heme o synthase -
P3S72_RS25450 (P3S72_25445) 5504293..5504628 - 336 WP_276194797.1 cytochrome o ubiquinol oxidase subunit IV -
P3S72_RS25455 (P3S72_25450) 5504628..5505254 - 627 WP_276194798.1 cytochrome o ubiquinol oxidase subunit III -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10036.53 Da        Isoelectric Point: 6.7164

>T274445 WP_276194792.1 NZ_CP119772:5500460-5500714 [Pseudomonas sp. D3]
MKILFTPEGWDDYLWFEQNDKAGLKRINLLIKAIQRDPFDGVGKPEPLKHNLSGFWSRRITAEHRLVYGIEDDEVQILMC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9564.92 Da        Isoelectric Point: 7.2034

>AT274445 WP_276194791.1 NZ_CP119772:5500209-5500463 [Pseudomonas sp. D3]
METINYTNARAHLSETMDRVNDDHIPLLLTRQKGEPVVMISLSEFNALEETAYLLRSPKNAERLINSVNSLRAGKAKARR
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References