Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 883632..884228 Replicon chromosome
Accession NZ_CP119772
Organism Pseudomonas sp. D3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag P3S72_RS03800 Protein ID WP_247407437.1
Coordinates 883926..884228 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag P3S72_RS03795 Protein ID WP_198718356.1
Coordinates 883632..883922 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3S72_RS03775 (P3S72_03775) 880004..882079 - 2076 WP_276196308.1 TonB-dependent copper receptor -
P3S72_RS03780 (P3S72_03780) 882173..882598 - 426 WP_276196309.1 DUF2946 domain-containing protein -
P3S72_RS03785 (P3S72_03785) 882610..883092 - 483 WP_276196310.1 copper chaperone PCu(A)C -
P3S72_RS03790 (P3S72_03790) 883140..883535 - 396 WP_247407434.1 DUF2946 domain-containing protein -
P3S72_RS03795 (P3S72_03795) 883632..883922 - 291 WP_198718356.1 putative addiction module antidote protein Antitoxin
P3S72_RS03800 (P3S72_03800) 883926..884228 - 303 WP_247407437.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P3S72_RS03805 (P3S72_03805) 884602..885321 - 720 WP_276196311.1 cobalt-precorrin-6A reductase -
P3S72_RS03810 (P3S72_03810) 885318..886523 - 1206 WP_276196312.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -
P3S72_RS03815 (P3S72_03815) 886562..887914 + 1353 WP_276196313.1 precorrin-3B synthase -
P3S72_RS03820 (P3S72_03820) 887907..888533 + 627 WP_276196314.1 precorrin-8X methylmutase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(4-95)

Antitoxin

Uncharacterized protein HI1420

(6-95)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11466.30 Da        Isoelectric Point: 8.5041

>T274443 WP_247407437.1 NZ_CP119772:c884228-883926 [Pseudomonas sp. D3]
MIEFEESIEFVKWLEAMRDPLAKVRVVTRLRMAQAGNFGDCEAVGEGVCEMRIHQGPGYRVYFTRRDKVVYLLLMGGDKS
TQSRDIKRAIHMAKNLGSQE

Download         Length: 303 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10394.96 Da        Isoelectric Point: 5.8124

>AT274443 WP_198718356.1 NZ_CP119772:c883922-883632 [Pseudomonas sp. D3]
MSESFTRFDAAKYLKTPFEMAAYLDACFEEDAGDGLLIRTALNDIARAQGMTQVARDAGLGRESLYKALSSTGNPEFATI
MKVMKALGLKLHATAV

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References