Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 3752287..3752944 Replicon chromosome
Accession NZ_CP119754
Organism Superficieibacter sp. HKU1

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag P0H77_RS17770 Protein ID WP_276158608.1
Coordinates 3752287..3752697 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag P0H77_RS17775 Protein ID WP_276158609.1
Coordinates 3752678..3752944 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P0H77_RS17750 (P0H77_17750) 3748280..3750013 - 1734 WP_276158604.1 single-stranded-DNA-specific exonuclease RecJ -
P0H77_RS17755 (P0H77_17755) 3750019..3750732 - 714 WP_276158605.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
P0H77_RS17760 (P0H77_17760) 3750757..3751653 - 897 WP_276158606.1 site-specific tyrosine recombinase XerD -
P0H77_RS17765 (P0H77_17765) 3751755..3752276 + 522 WP_276158607.1 flavodoxin FldB -
P0H77_RS17770 (P0H77_17770) 3752287..3752697 - 411 WP_276158608.1 protein YgfX Toxin
P0H77_RS17775 (P0H77_17775) 3752678..3752944 - 267 WP_276158609.1 FAD assembly factor SdhE Antitoxin
P0H77_RS17780 (P0H77_17780) 3753193..3754176 + 984 WP_276158610.1 tRNA-modifying protein YgfZ -
P0H77_RS17785 (P0H77_17785) 3754216..3754875 - 660 WP_276158611.1 hemolysin III family protein -
P0H77_RS17790 (P0H77_17790) 3755147..3755875 + 729 WP_276165172.1 MurR/RpiR family transcriptional regulator -
P0H77_RS17795 (P0H77_17795) 3755991..3757424 + 1434 WP_276158612.1 6-phospho-beta-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16194.34 Da        Isoelectric Point: 12.0140

>T274435 WP_276158608.1 NZ_CP119754:c3752697-3752287 [Superficieibacter sp. HKU1]
VVLWQSDLRVSWRSQWLSLLLHGVVAALVLLMPWPLSYLPLWLLLLSLVVFDCVRSQRRINACQGEIKLMMNSRLRWQGQ
EWEITGAPWMLKSGMMLRLRKLGSRRRQHLWLAADSMESGEWRDLRRMLMQQPARR

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10536.04 Da        Isoelectric Point: 5.1068

>AT274435 WP_276158609.1 NZ_CP119754:c3752944-3752678 [Superficieibacter sp. HKU1]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKHLFIRLLECDDPDLFNWLMNHGKPADADLQRMVQLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References