Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2662610..2662770 | Replicon | chromosome |
| Accession | NZ_CP119754 | ||
| Organism | Superficieibacter sp. HKU1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2662621..2662724 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2662610..2662770 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P0H77_RS12790 (P0H77_12790) | 2660287..2661723 | + | 1437 | WP_276157273.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P0H77_RS12795 (P0H77_12795) | 2661839..2662078 | + | 240 | WP_194206617.1 | YebV family protein | - |
| P0H77_RS12800 (P0H77_12800) | 2662184..2662375 | + | 192 | WP_194206616.1 | YebW family protein | - |
| - | 2662610..2662770 | + | 161 | - | - | Antitoxin |
| - | 2662621..2662724 | - | 104 | - | - | Toxin |
| P0H77_RS12805 (P0H77_12805) | 2662879..2663220 | - | 342 | WP_276157274.1 | YebY family protein | - |
| P0H77_RS12810 (P0H77_12810) | 2663238..2664107 | - | 870 | WP_276157275.1 | copper homeostasis membrane protein CopD | - |
| P0H77_RS12815 (P0H77_12815) | 2664109..2664483 | - | 375 | WP_276157276.1 | CopC domain-containing protein YobA | - |
| P0H77_RS12820 (P0H77_12820) | 2664620..2664850 | + | 231 | WP_176918866.1 | DNA polymerase III subunit theta | - |
| P0H77_RS12825 (P0H77_12825) | 2664884..2665546 | + | 663 | WP_276157277.1 | exodeoxyribonuclease X | - |
| P0H77_RS12830 (P0H77_12830) | 2665543..2667603 | - | 2061 | WP_276157278.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274431 NZ_CP119754:c2662724-2662621 [Superficieibacter sp. HKU1]
GGCATGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCATGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 161 bp
>AT274431 NZ_CP119754:2662610-2662770 [Superficieibacter sp. HKU1]
TTTAAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTA
AAAGTTGGCATTAATGCAGGCTTAGTCGCCATGCCTTATAAGAATAGTTGACCGTGCCAGGTTTTCCAGTCTGCTGTAAA
A
TTTAAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTA
AAAGTTGGCATTAATGCAGGCTTAGTCGCCATGCCTTATAAGAATAGTTGACCGTGCCAGGTTTTCCAGTCTGCTGTAAA
A
