Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2189545..2189816 | Replicon | chromosome |
| Accession | NZ_CP119746 | ||
| Organism | Escherichia coli strain E15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2189675..2189778 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2189545..2189816 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J19_RS10610 | 2186100..2186762 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P1J19_RS10615 | 2186786..2187442 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P1J19_RS10620 | 2187544..2187774 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P1J19_RS10625 | 2187913..2188287 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P1J19_RS10630 | 2188291..2189163 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| P1J19_RS10635 | 2189176..2189517 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2189545..2189816 | - | 272 | - | - | Antitoxin |
| - | 2189675..2189778 | + | 104 | - | - | Toxin |
| P1J19_RS10640 | 2189913..2190569 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| P1J19_RS10645 | 2190570..2190761 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P1J19_RS10650 | 2190866..2191102 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P1J19_RS10655 | 2191220..2192659 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274397 NZ_CP119746:2189675-2189778 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274397 NZ_CP119746:c2189816-2189545 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
