Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2175494..2175765 | Replicon | chromosome |
| Accession | NZ_CP119740 | ||
| Organism | Escherichia coli strain E94 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2175624..2175727 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2175494..2175765 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J23_RS10805 | 2172049..2172711 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P1J23_RS10810 | 2172735..2173391 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P1J23_RS10815 | 2173493..2173723 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P1J23_RS10820 | 2173862..2174236 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P1J23_RS10825 | 2174240..2175112 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| P1J23_RS10830 | 2175125..2175466 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2175494..2175765 | - | 272 | - | - | Antitoxin |
| - | 2175624..2175727 | + | 104 | - | - | Toxin |
| P1J23_RS10835 | 2175862..2176269 | + | 408 | Protein_2117 | metallophosphoesterase | - |
| P1J23_RS10840 | 2176346..2177269 | + | 924 | WP_001118645.1 | IS5 family transposase | - |
| P1J23_RS10845 | 2177326..2177583 | + | 258 | Protein_2119 | serine/threonine-protein phosphatase | - |
| P1J23_RS10850 | 2177584..2177775 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P1J23_RS10855 | 2177880..2178116 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P1J23_RS10860 | 2178234..2179673 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2176346..2177269 | 923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274371 NZ_CP119740:2175624-2175727 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274371 NZ_CP119740:c2175765-2175494 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
