Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1900806..1901077 | Replicon | chromosome |
| Accession | NZ_CP119734 | ||
| Organism | Escherichia coli strain E92 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1900844..1900947 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1900806..1901077 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J22_RS09685 | 1896898..1898337 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P1J22_RS09690 | 1898455..1898691 | + | 237 | WP_001295499.1 | YebV family protein | - |
| P1J22_RS09695 | 1898796..1898987 | + | 192 | WP_001296140.1 | YebW family protein | - |
| P1J22_RS09700 | 1898988..1899245 | - | 258 | Protein_1912 | serine/threonine-protein phosphatase | - |
| P1J22_RS09705 | 1899302..1900225 | - | 924 | WP_001118645.1 | IS5 family transposase | - |
| P1J22_RS09710 | 1900302..1900709 | - | 408 | Protein_1914 | metallophosphoesterase | - |
| - | 1900806..1901077 | + | 272 | - | - | Antitoxin |
| - | 1900844..1900947 | - | 104 | - | - | Toxin |
| P1J22_RS09715 | 1901105..1901446 | - | 342 | WP_000976492.1 | YebY family protein | - |
| P1J22_RS09720 | 1901459..1902331 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| P1J22_RS09725 | 1902335..1902709 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P1J22_RS09730 | 1902848..1903078 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P1J22_RS09735 | 1903180..1903836 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P1J22_RS09740 | 1903860..1904522 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1899302..1900225 | 923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274337 NZ_CP119734:c1900947-1900844 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274337 NZ_CP119734:1900806-1901077 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
