Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2031497..2031768 | Replicon | chromosome |
| Accession | NZ_CP119577 | ||
| Organism | Escherichia coli strain C012_chr | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2031627..2031730 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2031497..2031768 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J04_RS09770 | 2028052..2028714 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P1J04_RS09775 | 2028738..2029394 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P1J04_RS09780 | 2029496..2029726 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P1J04_RS09785 | 2029865..2030239 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P1J04_RS09790 | 2030243..2031115 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| P1J04_RS09795 | 2031128..2031469 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2031497..2031768 | - | 272 | - | - | Antitoxin |
| - | 2031627..2031730 | + | 104 | - | - | Toxin |
| P1J04_RS09800 | 2031865..2032521 | + | 657 | WP_021565248.1 | protein-serine/threonine phosphatase | - |
| P1J04_RS09805 | 2032522..2032713 | - | 192 | WP_000457842.1 | YebW family protein | - |
| P1J04_RS09810 | 2032818..2033054 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P1J04_RS09815 | 2033172..2034611 | - | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274231 NZ_CP119577:2031627-2031730 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274231 NZ_CP119577:c2031768-2031497 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
