Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 3319974..3320647 Replicon chromosome
Accession NZ_CP119566
Organism Pararhizobium sp. T808

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PYR65_RS16190 Protein ID WP_276118706.1
Coordinates 3319974..3320396 (-) Length 141 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PYR65_RS16195 Protein ID WP_276118707.1
Coordinates 3320393..3320647 (-) Length 85 a.a.

Genomic Context

PYR65_RS16155PYR65_RS16160PYR65_RS16205PYR65_RS16225PYR65_RS16230PYR65_RS16165PYR65_RS16170PYR65_RS16175PYR65_RS16180PYR65_RS16185PYR65_RS16190PYR65_RS16195PYR65_RS16200PYR65_RS16210PYR65_RS16215PYR65_RS16220
Location: 3315168..3315455 (288 bp)
Type: Others
Protein ID: WP_276118700.1
Location: 3315452..3315751 (300 bp)
Type: Others
Protein ID: WP_276118701.1
Location: 3322509..3322646 (138 bp)
Type: Others
Protein ID: WP_200953657.1
Location: 3324514..3324951 (438 bp)
Type: Others
Protein ID: WP_276118711.1
Location: 3325006..3325428 (423 bp)
Type: Others
Protein ID: WP_276118712.1
Location: 3315761..3317377 (1617 bp)
Type: Others
Protein ID: WP_276118702.1
Location: 3317537..3318496 (960 bp)
Type: Others
Protein ID: WP_276118703.1
Location: 3318532..3319002 (471 bp)
Type: Others
Protein ID: WP_276118704.1
Location: 3319004..3319498 (495 bp)
Type: Others
Protein ID: WP_276118705.1
Location: 3319495..3319977 (483 bp)
Type: Others
Protein ID: WP_060641371.1
Location: 3319974..3320396 (423 bp)
Type: Toxin
Protein ID: WP_276118706.1
Location: 3320393..3320647 (255 bp)
Type: Antitoxin
Protein ID: WP_276118707.1
Location: 3320704..3322095 (1392 bp)
Type: Others
Protein ID: WP_276118708.1
Location: 3322667..3323446 (780 bp)
Type: Others
Protein ID: WP_276118709.1
Location: 3323448..3324134 (687 bp)
Type: Others
Protein ID: WP_276118710.1
Location: 3324131..3324400 (270 bp)
Type: Others
Protein ID: WP_244490300.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PYR65_RS161553315168..3315455+288WP_276118700.1type II toxin-antitoxin system ParD family antitoxin-
PYR65_RS161603315452..3315751+300WP_276118701.1type II toxin-antitoxin system RelE/ParE family toxin-
PYR65_RS161653315761..3317377-1617WP_276118702.1citramalate synthase-
PYR65_RS161703317537..3318496-960WP_276118703.1prolyl aminopeptidase-
PYR65_RS161753318532..3319002-471WP_276118704.1GFA family protein-
PYR65_RS161803319004..3319498-495WP_276118705.1GFA family protein-
PYR65_RS161853319495..3319977-483WP_060641371.1GFA family protein-
PYR65_RS161903319974..3320396-423WP_276118706.1type II toxin-antitoxin system VapC family toxinToxin
PYR65_RS161953320393..3320647-255WP_276118707.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
PYR65_RS162003320704..3322095-1392WP_276118708.1cysteine--tRNA ligase-
PYR65_RS162053322509..3322646+138WP_200953657.1hypothetical protein-
PYR65_RS162103322667..3323446-780WP_276118709.1SOS response-associated peptidase-
PYR65_RS162153323448..3324134-687WP_276118710.1nucleotidyl transferase AbiEii/AbiGii toxin family protein-
PYR65_RS162203324131..3324400-270WP_244490300.1hypothetical protein-
PYR65_RS162253324514..3324951+438WP_276118711.1NUDIX domain-containing protein-
PYR65_RS162303325006..3325428+423WP_276118712.1TIGR02301 family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--3315452..33244008948


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(6-126)

Antitoxin

SpoVT-AbrB domain

(15-59)


Sequences

Toxin        


Download         Length: 141 a.a.        Molecular weight: 15360.52 Da        Isoelectric Point: 5.1784

>T274198 WP_276118706.1 NZ_CP119566:c3320396-3319974 [Pararhizobium sp. T808]
VSGLVYMLDTNILSDTIRNPFGVASQYMERVSEDALCVSAIVASEMRYGIRKKGSPRLSYLVENTLSRIAILPYDDAASQ
SYSVIRTALERQGKSIGLADLLIAAHALSLGLTIVTNNTREFSRVEGLTIENWLAAEEHP

Download         Length: 423 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9714.11 Da        Isoelectric Point: 4.4909

>AT274198 WP_276118707.1 NZ_CP119566:c3320647-3320393 [Pararhizobium sp. T808]
MTVIHVDEGREVKLFRNGRNQAVRIPVEFELPGNEAIMRKEGDCLIIEPKKKSGLLEWLRAQEPLDEEFPDLDEKSPPPK
DFDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References