274196

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2578892..2579571 Replicon chromosome
Accession NZ_CP119566
Organism Pararhizobium sp. T808

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PYR65_RS12370 Protein ID WP_276118193.1
Coordinates 2578892..2579320 (-) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PYR65_RS12375 Protein ID WP_276118194.1
Coordinates 2579317..2579571 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PYR65_RS12345 2574450..2574965 + 516 WP_276118188.1 hypothetical protein -
PYR65_RS12350 2575056..2575889 + 834 WP_276118189.1 RNA methyltransferase -
PYR65_RS12355 2575876..2576679 + 804 WP_276118190.1 glutamate racemase -
PYR65_RS12360 2576813..2577205 + 393 WP_276118191.1 VOC family protein -
PYR65_RS12365 2577376..2578890 + 1515 WP_276118192.1 ATP-binding protein -
PYR65_RS12370 2578892..2579320 - 429 WP_276118193.1 PIN domain-containing protein Toxin
PYR65_RS12375 2579317..2579571 - 255 WP_276118194.1 CopG family transcriptional regulator Antitoxin
PYR65_RS12380 2579882..2580499 + 618 WP_060640871.1 30S ribosomal protein S4 -
PYR65_RS12385 2580603..2581541 + 939 WP_060640872.1 glutaminase -
PYR65_RS12390 2581753..2582565 + 813 WP_244490285.1 tRNA 2-thiocytidine(32) synthetase TtcA -
PYR65_RS12395 2582562..2583386 + 825 WP_276118195.1 inositol monophosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-127)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15642.98 Da        Isoelectric Point: 6.7489

>T274196 WP_276118193.1 NZ_CP119566:c2579320-2578892 [Pararhizobium sp. T808]
MTFLLDVNVLIALADSSHSHYSVATSWFEKIGQKDWATCPITENGMIRILSDPRYGSPVPDAAMATELLQLFRLTGKHSF
WHDDISLTDPGIFIRDKVTSKHTTDIYLLGLAKAHGGRLATFDRRLATQAVIGGSDILCLLA

Download         Length: 429 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9248.46 Da        Isoelectric Point: 4.0855

>AT274196 WP_276118194.1 NZ_CP119566:c2579571-2579317 [Pararhizobium sp. T808]
MQTTLKIDDDVLLAAQQLADRNGLAIDQIISDMARRGMGMSAYISQRNGIPVLIRPGAQIVTVEMVDALRDEDYDYFSSD
AGDK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References