Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 1809687..1810173 Replicon chromosome
Accession NZ_CP119566
Organism Pararhizobium sp. T808

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag PYR65_RS08750 Protein ID WP_276121008.1
Coordinates 1809916..1810173 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag PYR65_RS08745 Protein ID WP_276120688.1
Coordinates 1809687..1809920 (+) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PYR65_RS08730 1805246..1806334 + 1089 WP_060637043.1 hypothetical protein -
PYR65_RS08735 1806531..1807679 + 1149 WP_276120686.1 hypothetical protein -
PYR65_RS08740 1807683..1809599 + 1917 WP_276120687.1 AAA family ATPase -
PYR65_RS08745 1809687..1809920 + 234 WP_276120688.1 DUF6290 family protein Antitoxin
PYR65_RS08750 1809916..1810173 + 258 WP_276121008.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PYR65_RS08755 1810204..1811505 + 1302 WP_276120689.1 hypothetical protein -
PYR65_RS08760 1811498..1812625 + 1128 WP_276120690.1 DUF2333 family protein -
PYR65_RS08765 1812809..1814488 + 1680 WP_276120691.1 formate--tetrahydrofolate ligase -
PYR65_RS08770 1814548..1815057 - 510 WP_060637051.1 DUF1993 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin

Protein of unknown function DUF6290

(6-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9770.33 Da        Isoelectric Point: 10.6555

>T274195 WP_276121008.1 NZ_CP119566:1809916-1810173 [Pararhizobium sp. T808]
IDLSDAADKTLRKISKSDAKRIAGFLYQRVTALDNPRQLGQALQGSKLGDLWRYRVGDFRVLCKIQDSRLVVLVIEIGHR
RDIYR

Download         Length: 258 bp

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8842.97 Da        Isoelectric Point: 4.3246

>AT274195 WP_276120688.1 NZ_CP119566:1809687-1809920 [Pararhizobium sp. T808]
MAKQTAIRLSDETYERLQALAARTGRTATFYIRQAIEEHLEDLEDIYLAESVLEKIQRGEMGTRPLKEAMEELGLDD

Download         Length: 234 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References