Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3434686..3434852 | Replicon | chromosome |
| Accession | NZ_CP119531 | ||
| Organism | Raoultella electrica strain Rd210413 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3434691..3434794 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3434686..3434852 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P2G42_RS16475 (P2G42_16475) | 3430283..3431716 | + | 1434 | WP_285237194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P2G42_RS16480 (P2G42_16480) | 3431831..3432070 | + | 240 | WP_100682324.1 | YebV family protein | - |
| P2G42_RS16485 (P2G42_16485) | 3432163..3432354 | + | 192 | WP_100682323.1 | YebW family protein | - |
| P2G42_RS16490 (P2G42_16490) | 3432351..3433004 | - | 654 | WP_131047781.1 | protein-serine/threonine phosphatase | - |
| P2G42_RS16495 (P2G42_16495) | 3433148..3434119 | + | 972 | WP_285238331.1 | VirK/YbjX family protein | - |
| P2G42_RS16500 (P2G42_16500) | 3434241..3434384 | + | 144 | WP_141964342.1 | Ecr family regulatory small membrane protein | - |
| - | 3434686..3434852 | + | 167 | - | - | Antitoxin |
| - | 3434691..3434794 | - | 104 | - | - | Toxin |
| P2G42_RS16505 (P2G42_16505) | 3434951..3435292 | - | 342 | WP_131050311.1 | YebY family protein | - |
| P2G42_RS16510 (P2G42_16510) | 3435306..3436175 | - | 870 | WP_285237195.1 | copper homeostasis membrane protein CopD | - |
| P2G42_RS16515 (P2G42_16515) | 3436179..3436553 | - | 375 | WP_142255865.1 | CopC domain-containing protein YobA | - |
| P2G42_RS16520 (P2G42_16520) | 3436680..3436910 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| P2G42_RS16525 (P2G42_16525) | 3436989..3437648 | + | 660 | WP_131050313.1 | exodeoxyribonuclease X | - |
| P2G42_RS16530 (P2G42_16530) | 3437654..3439714 | - | 2061 | WP_285237196.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274168 NZ_CP119531:c3434794-3434691 [Raoultella electrica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT274168 NZ_CP119531:3434686-3434852 [Raoultella electrica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
