Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 3182054..3182663 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PY308_RS15445 Protein ID WP_275784191.1
Coordinates 3182054..3182302 (-) Length 83 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PY308_RS15450 Protein ID WP_275784194.1
Coordinates 3182388..3182663 (-) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS15435 3179269..3181179 + 1911 WP_275784187.1 UvrD-helicase domain-containing protein -
PY308_RS15440 3181455..3181790 - 336 WP_275784189.1 hypothetical protein -
PY308_RS15445 3182054..3182302 - 249 WP_275784191.1 type II toxin-antitoxin system YafQ family toxin Toxin
PY308_RS15450 3182388..3182663 - 276 WP_275784194.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
PY308_RS15455 3183291..3185165 - 1875 WP_275784197.1 AAA family ATPase -
PY308_RS15460 3185167..3185469 - 303 WP_275784199.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3174615..3185469 10854


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-80)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-74)


Sequences

Toxin        


Download         Length: 83 a.a.        Molecular weight: 9418.52 Da        Isoelectric Point: 5.1084

>T274132 WP_275784191.1 NZ_CP119409:c3182302-3182054 [Rhizobium gei]
VKDWDRYNKAGKSDMNRATELMTLIIFKKKLGPEWSDHELNGSEWNGAREAHIGGDFLLVYTCDDDSVEFVRLGTHSELF
GR

Download         Length: 249 bp

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10181.74 Da        Isoelectric Point: 7.2056

>AT274132 WP_275784194.1 NZ_CP119409:c3182663-3182388 [Rhizobium gei]
MAATKMLHVRVDDDLSEDANAVFRSLGLTMSEAIRLFLHRSVVSQGIPLELKVPNATTLEALAEARQMRRAKKVRFSTPE
ELFANLNEAKD

Download         Length: 276 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References