Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-couple_hipB
Location 3085219..3085892 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PY308_RS15015 Protein ID WP_275784013.1
Coordinates 3085632..3085892 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PY308_RS15010 Protein ID WP_275784010.1
Coordinates 3085219..3085635 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS14990 3080452..3080961 + 510 WP_275784001.1 DUF1993 domain-containing protein -
PY308_RS14995 3081010..3082689 - 1680 WP_275784003.1 formate--tetrahydrofolate ligase -
PY308_RS15000 3082779..3083903 - 1125 WP_275784005.1 DUF2333 family protein -
PY308_RS15005 3083896..3085194 - 1299 WP_275784007.1 hypothetical protein -
PY308_RS15010 3085219..3085635 - 417 WP_275784010.1 helix-turn-helix transcriptional regulator Antitoxin
PY308_RS15015 3085632..3085892 - 261 WP_275784013.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PY308_RS15020 3085953..3087863 - 1911 WP_275784016.1 ATP-binding protein -
PY308_RS15025 3087866..3089014 - 1149 WP_275784019.1 hypothetical protein -
PY308_RS15030 3089217..3090305 - 1089 WP_275784021.1 hypothetical protein -
PY308_RS15035 3090456..3090833 - 378 WP_275784025.1 cytochrome c family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-81)

Antitoxin

Cro/C1-type helix-turn-helix domain

(72-126)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 9907.48 Da        Isoelectric Point: 9.9584

>T274131 WP_275784013.1 NZ_CP119409:c3085892-3085632 [Rhizobium gei]
MRVVYEKEAIKALTRMPATDARRIRQKVQQYADDPATLANNVKKLQGVEYYRLRVGDWRVIFNEDGLVIDVIKIAGRGEV
YKGLEP

Download         Length: 261 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15232.20 Da        Isoelectric Point: 4.3342

>AT274131 WP_275784010.1 NZ_CP119409:c3085635-3085219 [Rhizobium gei]
MNTPVSFTTPNGEEMVLLSRSDYNMLIKQSELVEDLEDLLAVKAYESRVAAGEEERVPAEFVDRLINGEHPVRVWREFRG
LSAKDLAAAAGISTAYISEIETGKKEGSISVLKAIARVLRLDLDDVVPTRDEAPAKDD

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References