Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 1711407..1712083 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PY308_RS08290 Protein ID WP_275790055.1
Coordinates 1711730..1712083 (+) Length 118 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PY308_RS08285 Protein ID WP_275790053.1
Coordinates 1711407..1711661 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS08255 1707140..1707409 - 270 WP_275790035.1 hypothetical protein -
PY308_RS08260 1707537..1707959 - 423 WP_275790037.1 TIGR02301 family protein -
PY308_RS08265 1707956..1708435 - 480 WP_275790040.1 NUDIX hydrolase -
PY308_RS08270 1708495..1709268 + 774 WP_275790043.1 SOS response-associated peptidase -
PY308_RS08275 1709275..1709445 - 171 WP_275790046.1 hypothetical protein -
PY308_RS08280 1709848..1711350 + 1503 WP_275790049.1 cysteine--tRNA ligase -
PY308_RS08285 1711407..1711661 + 255 WP_275790053.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
PY308_RS08290 1711730..1712083 + 354 WP_275790055.1 PIN domain-containing protein Toxin
PY308_RS08295 1712080..1712562 + 483 WP_275790058.1 GFA family protein -
PY308_RS08300 1712559..1713047 + 489 WP_275790060.1 GFA family protein -
PY308_RS08305 1713044..1713514 + 471 WP_275790061.1 GFA family protein -
PY308_RS08310 1713556..1714515 + 960 WP_275790064.1 prolyl aminopeptidase -
PY308_RS08315 1714739..1716352 + 1614 WP_275790067.1 citramalate synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-103)

Antitoxin

SpoVT-AbrB domain

(15-59)


Sequences

Toxin        


Download         Length: 118 a.a.        Molecular weight: 12807.58 Da        Isoelectric Point: 4.5610

>T274129 WP_275790055.1 NZ_CP119409:1711730-1712083 [Rhizobium gei]
VRRVETVGSDKLCISALVASELRYGAVKKQSERLASLIENILERLDIVAYETAATVHYADIRDQLTGSGNLIGPMDLLIA
AHARALDLTLVTDNTAEFSRVDGLKLENWIADQETVP

Download         Length: 354 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9855.31 Da        Isoelectric Point: 4.4777

>AT274129 WP_275790053.1 NZ_CP119409:1711407-1711661 [Rhizobium gei]
MTVIQVDQEREVKLFRNGRNQAVRIPVEFELPGNEAIMRKEGERLIIEPKRKSGLLEWLRAQEPWTEEFPDIDKGVLPLE
DVDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References