Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 1656310..1656869 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PY308_RS07960 Protein ID WP_275789907.1
Coordinates 1656310..1656675 (-) Length 122 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PY308_RS07965 Protein ID WP_275789911.1
Coordinates 1656675..1656869 (-) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS07940 1652013..1652231 + 219 WP_275789897.1 hypothetical protein -
PY308_RS07945 1652482..1653126 + 645 WP_275789899.1 hypothetical protein -
PY308_RS07950 1653129..1654211 + 1083 WP_275789901.1 ImmA/IrrE family metallo-endopeptidase -
PY308_RS07955 1654639..1656303 + 1665 WP_275789904.1 electron transfer flavoprotein-ubiquinone oxidoreductase -
PY308_RS07960 1656310..1656675 - 366 WP_275789907.1 VapC toxin family PIN domain ribonuclease Toxin
PY308_RS07965 1656675..1656869 - 195 WP_275789911.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
PY308_RS07970 1657033..1657650 + 618 WP_275789914.1 L,D-transpeptidase -
PY308_RS07975 1657657..1658226 - 570 WP_275789915.1 histidine phosphatase family protein -
PY308_RS07980 1658423..1658860 - 438 WP_275789918.1 DoxX family protein -
PY308_RS07985 1659170..1660066 + 897 WP_275789921.1 diacylglycerol kinase family lipid kinase -
PY308_RS07990 1660083..1661102 - 1020 WP_275789924.1 glycosyltransferase family 2 protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Bacterial antitoxin of type II TA system, VapB

(1-46)


Sequences

Toxin        


Download         Length: 122 a.a.        Molecular weight: 13585.76 Da        Isoelectric Point: 6.4797

>T274128 WP_275789907.1 NZ_CP119409:c1656675-1656310 [Rhizobium gei]
MILVDASVWIDHLRAPVEELQALLESSSVLMHPFVIGEIGLGSIPRYDFTMRGLSKFPLATKARDDDVLYLVREHRLYGR
GVGYIDVHLLASTLLTPEACLWTRDKRLAEIAASFGVGYNR

Download         Length: 366 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 6880.84 Da        Isoelectric Point: 6.2845

>AT274128 WP_275789911.1 NZ_CP119409:c1656869-1656675 [Rhizobium gei]
MRTTVTIDDALLADAKEFSGIEETAAVIKEALTALVQREAARRLSRLGGSAPDIEAPPRRRFGA

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References